Profile of Abul Bashar Mir Md. Khademul Islam
... Name Abul Bashar Mir Md. Khademul Islam
Designation Professor
Last Degree PhD
   

Education

  • PhD, Biomedicine (Bioinformatics, Epigenetics), Pompeu Fabra University (part in University of Illinois at Chicago, USA), 2012. Distinction.
  • M.Sc., Applied Medical Engineering Science, Yamaguchi University, Japan, 2007. Excellent.
  • M.S.,  Microbiology, University of Dhaka, 2001, 1st class, 1st position.
  • B.Sc., Microbiology, University of Dhaka, 2000, 1st class, 1st position.
  • H.S.C., Notre Dame College, (Science), 1996, 1st Division, Star.
  • S.S.C. Government Laboratory High School, 1994, 1st Division, Star.

 

Thesis

  1. Doctoral research (2008-2012, Spain, part in USA): Worked on various projects related to Biomedical sciences (Bioinformatics). Thesis title: “Delineating epigenetic regulatory mechanisms of cell proliferation and differentiation”.
  2. Master degree research (2006-2007, Japan): Worked on Cell Signaling and cancer molecular mechanisms. Thesis title: “The effect of the chemokine SDF-1 on NF-kB activation in human myeloma cells.”
  3. Master degree research (2003-2005, Bangladesh): Worked in microbiology area. Thesis title “A comparative assessment of phenotypic and genotypic characterization of Shegella spp. Isolated from food and clinical samples.”
  4. Bachelor degree research (2002-2003, Bangladesh): Worked in the field of microbiology and immunology. Thesis title “Serodiagnosis and risk factor analysis for Helicobacter pylori and Shigella flexneri infection in Bangladeshi population.”

Areas of Expertise

High-throughput biology including Whole Genome Sequencing (WGS), ChIP-seq, RNA-seq, Single Cell RNAseq  (scRNA-seq), ATAC-seq  HiC, microarray, Chip-on-chip, ChIP-tiling array, metagenomics.

Laboratory Skills

Microbiological techniques, cell culture, Immunoblotting/Western blotting, Immune precipitation (IP), Electrophoretic Mobility Shift Assay (EMSA), Cell transfection, cell immune staining, DAPI, Laser confocal microscopy, Fluorescent microscopy, Flow-cytometry, FACS (Fluorescence-activated cell sorter), Real time PCR, Gel electrophoresis, UV-Vis spectroscopy, Gel Immunodiffusion, Hemagglutination, Ribotyping, enzyme assay, plasmid profiling, FISH, ELISA. DNA/Plasmid extraction, cloning etc. High-throughput techniques: microarray, ChIP-seq, RNA-seq.

Computer OS and Programming/Scripting Skills

Unix/Linux; shell/bash/awk scripting; Python programming language; basic Perl; R statistical programming language; basic html/CSS; Bioconductor bioinformatics programming tools; various advanced bioinformatics tools related to NGS, genomic and proteomics analysis.

Contribution to Bioinformatic Database/Tools

IntOGen system (www.intogen.org ; published in Nature Methods). Gitools (www.gitools.org).

 

Professional Organization Membership:

  1. Associate Fellow, Bangladesh Academy of Sciences (BAS)
  2. Young Affiliates, The World Academy of Sciences (TWAS) (2017-2021)
  3. Member, National Young Academy of Bangladesh (NYAB), (2018)
  4. General Secretary, Bangladesh Society for Bioinformatics (Interim committee).
  5. Global Network of Bangladesh Biotechnologist (GNOBB), Member, Executive Committee (2016-19).
  6. Asian Federation of Biotechnology Bangladesh (AFOB), (Member)
  7. Bangladesh Society of Microbiologist (BSM).
  8. Graduate Microbiologist Association (GMA) (Bangladesh).
  9. Japanese Society of Haematology (former member).
  10. American Society of Microbiologist (former member)

 

Keynote speaker/Invited talk/Trainer/Key resource person

  1. Invited Speaker & Workshop Trainer: Invited speaker and trainer for the workshop on “Analysis and Visualization of Multi-Dimensional Data with Gitools”, organized by the University of Illinois at Chicago (UIC) College of Medicine, USA. Date: 17th February 2016.
  2. Trainer of Bioinformatics workshop: organized by Biotechnology and Genetic Engineering Department, University of Khulna and Young Biotechnologist Bangladesh. Khulna, Bangladesh. 2012.
  3. Keynote speaker: seminar on “Genomics and Bioinformatics: Prospects and Promises” -- Organized by National Institute of Biotechnology (NIB) and Bangabandhu Sheikh Mujibur Rahman Agricultural University (BSMRAU), Gazipur, Bangladesh. Date: 3rd June 2013.
  4. Keynote Speaker & Key resource person: seminar on “Recent sequencing of goat genome: implications for goat research and development in Bangladesh”. Organized by Chittagong Veterinary and Animal Sciences University (CVASU) in collaboration with PRTC, BLRI, and National Institute of Biotechnology (NIB). Date: 17th June 2013.
  5. Key resource person: on “Genomics and Bioinformatics Tools used in Computational Biology”. Organized by Chittagong Veterinary and Animal Sciences University (CVASU) in collaboration with Dept. of Computer Science and Engineering, (CUET) and USTC. Date 29-30 May, 2013 at CVASU campus in Chittagong, Bangladesh
  6. Invited oral presentation: seminar on “Application of Biotechnology in addressing the development needs of Bangladesh”. Talk title: “Promise of bioinformatics in pharmaceutics and diagnostics”. Organized by Committee of Action for Research, Extension & Services (CARES). Venue: Dhaka, Bangladesh. Date: 25-26 May 2013.
  7. Key resource person: Training programme on “DNA Barcoding: A Tool for Molecular Taxonomy”. Organized by Department of Zoology, University of Dhaka under Higher Education Quality Enhancement Project, UGC, Bangladesh. Date: 1-4 October, 2013.
  8. Key resource person: Hands on Training On: Bioinformatics for Biological Research. Organized by Department of Zoology, University of Dhaka under Higher Education Quality Enhancement Project, UGC, Bangladesh. Date: November 17-21, 2013
  9. Key resource person: Bioinformatics short courses on: Genomics, Proteomics & Networks in Biology Analyses. Organized by Chittagong Veterinary and Animal Sciences University (CVASU), Chittagong, Bangladesh. Date 12-13 March, 2014.
  10. Trainer: “Advance Training on Biotechnology (Bioinformatics part). Organized by National Institute of Biotechnology (NIB), Savar, Bangladesh. 07-16 March, 2015.
  11. Resource person: “Application of Advanced Technology in Biomedical Research” Organized by ‘Establishment of a Center for Advanced Biomedical Research (ECABR)” of University Grants Commission of Bangladesh, Bangabandhu Sheikh Mujib Medical University. 31st March 2015.
  12. Key resource person: Bioinformatics courses on: Genomics, Proteomics & Networks in Biology Analyses. Organized by Chittagong Veterinary and Animal Sciences University (CVASU), Chittagong, Bangladesh. Date 23-24 April, 2015.
  13. Trainer: Training on Basic Biotechnology. Organized by National Institute of Biotechnology (NIB), Savar, Bangladesh. 23-28 May, 2015.
  14. Trainer:: Hands on training workshop on “Basic Sanger Sequencing and Sequence Data Analysis”, Organized by Center for Advanced Research in Sciences (CARS), University of Dhaka, and Ministry of Public Administration (MOPA), Peoples Republic of Bangladesh, Dhaka. Dates: 14-18 June, 2015.
  15. Trainer: Training on Basic Biotechnology. Organized by National Institute of Biotechnology (NIB), Savar, Bangladesh. 24-29 October, 2015.
  16. Key resource person: Bioinformatics Methods & Applications in Genomics, Proteomics & Drug Discovery. Organized by Bangladesh Society for Bioinformatics (BSB), Chittagong Veterinary and Animal Sciences University (CVASU), University of Science and Technology Chittagong (USTC). Date 5-6 November, 2015.
  17. Invited Speaker: 1st International Conference on Drug Discovery & Development Research in Developing Countries. Organized by Bangladesh University of Health Sciences (BUHS) and Center for Genetic Engineering and Biotechnology (Trieste, Italy. 03-06 October 2015, Dhaka, Bangladesh. Topics: "Bioinformatic and computational biological approaches in the discovery and development of novel genetic and epigenetic drug targets and drug screening". And "Requisites for Establishment of Enabling Technologies in Developing Countries"
  18. Trainer: Training on Basic Biotechnology. Organized by National Institute of Biotechnology (NIB), Savar, Bangladesh. 2nd November, 2015.
  19. Trainer: Training on Basic Biotechnology. Organized by National Institute of Biotechnology (NIB), Savar, Bangladesh. 07th April 2016.
  20. Trainer: Training on Basic Biotechnology. Organized by National Institute of Biotechnology (NIB), Savar, Bangladesh. 29th September 2016.
  21. Trainer: Training on Basic Biotechnology. Organized by National Institute of Biotechnology (NIB), Savar, Bangladesh. 21 March 2017.
  22. Guest lecturer: “Workshop on How to prepare a manuscript”. Organized by Bangladesh Medical Research Council (BMRC). From 25-27 February, 2018. | From 22-26 April, 2018 | From 13-17 May, 2018 | From 3-7 June 2018 | 24-28 June 2018 |1-5 July 2018

Publications:

Research Article  (Published: 59, Accepted 1, Under review: 6, Total Impact Factor: ~ 360):

2018

66. Single cell RNA-sequencing reveals a metabolic aspect of apoptosis in Rbf mutant. Majd M Ariss, Abul B.M.M.K. Islam, Hayley Critcher, Maria Paula Zappia and Maxim V Frolov. (under review)

65. Mst. Noorjahan Begum, Suprovath Kumar Sarker, Golam Sarower Bhuyan, Md Tarikul Islam, Shahinur Haque, Tasnia Kawsar Konika, Syeda Kashfi Qadri, Tasnuva Ahmed, Hurjahan Banu, Nusrat Sultana, Asifuzzaman Rahat, Mohammad Amir Hossain, Kohinoor Jahan Shyamaly, Suraiya Begum, Sadia Sultana, Sheikh Maksudur Rahman, Narayan Saha, Taufiqur Rahman Bhuiyan, Mohiul Islam Chowdhury, Mizanul Hasan, M A Hasanat, Abu A. Sajib, Abul B.M.M.K Islam, Sharif Akhteruzzaman, Syed Saleheen Qadri, Firdausi Qadri and Kaiissar Mannoor. Profiling of carnitine and acylcarnitines of late-diagnosed hypothyroid patients with fatigue under levothyroxine treatment. (under review).

64. Suprovath Kumar Sarker, Md Tarikul Islam, Aparna Biswas, Golam Sarower Bhuyan, Rosy Sultana, Nusrat Sultana, Shagoofa Rakhshanda, Mst. Noorjahan Begum, Asifuzzaman Rahat, Sharmina Yeasmin, Mowshori Khannam, Asim Kumar Saha, Farjana Akther Noor, Abu A. Sajib, Abul Islam, Syeda Kashfi Qadri, Mohammod Shahidullah, Mohammad Abdul Mannan, AKM Muraduzzaman, Tahmina Shirin, Sheikh Maksudur Rahman, Syed Saleheen Qadri, Narayan Saha, Sharif Akhteruzzaman, Firdausi Qadri and Kaiissar Mannoor. ge-specific cut-off values of amino acids and acylcarnitines for diagnosis of inborn errors of metabolism using liquid chromatography tandem mass spectrometry. (under review)

63. Mst. Noorjahan Begum, Md Tarikul Islam, Sheikh Rezwan Hossain, Golam Sarower Bhuyan, Suprovath Kumar Sarker, Asifuzzaman Rahat, Shahinur Haque, Tasnia Kawsar Konika, Syeda Kashfi Qadri, Md. Sazzadul Islam, Rosy Sultana, Suraiya Begum, Sadia Sultana, Narayan Saha, Mizanul Hasan, MA Hasanat, Hurjahan Banu, Mohammad Halim, Hossain U. Shekhar, Emran Kabir Chowdhury, Abu A. Sajib, Abul Islam, Syed Saleheen Qadri, Sharif Akhteruzzaman, F. Qadri and Kaiissar Mannoor. Mutation spectrum in TPO gene of Bangladeshi patients with thyroid dyshormonogenesis and analysis of the effects of different mutations on the structural features and functions of TPO protein through in silico approach. (under review)

62. Maria Paula Zappia, Alice Rogers, Abul Islam and Maxim V Frolov. Rbf activates the myogenic transcriptional program to promote skeletal muscle differentiation. (under review)

62. Md. Wahid Murad, Salwa Mohd Mostafa and Abul B.M.M.K. Islam. A switch in bidirectional histone mark leads to differential modulation of lincRNAs involved in neuronal and hematopoietic cell differentiation from their progenitors. (under review)

61. Md. Sajedul Islam, Marwah Karim, Md. Wahid Murad and Abul B.M.M.K. Islam. In silico identified zika virus microRNAs aids in viral pathogenesis by targeting essential host genes involve in immune and neurological functions. BMC Infectious Disease. (accepted). [Impact Factor: 2.768]

60. Belen Lope.z-Millan, Rafael Diaz de la Guardia, Heleia Roca-Ho, Abul BMMK Islam, Eduardo Anguita, Damia Romero-Moya, Cristina Prieto, Francisco Gutierrez-Agüera, Jose Bejarano-Garcia, Jose Perez-Simon, Paula Costales, Fernando Anjos-Afonso, Montse Rovira, Pedro Marin, José Fuster, Alvaro Urbano-Ispizua, Clara Bueno, and Pablo Menendez. IMiDs mobilize Acute Myeloid Leukemia blasts to peripheral blood through downregulation of CXCR4 but do not potentiate AraC/Idarubicin activity in preclinical models of AML. Oncoimmunology, Volume 7, 2018 - Issue 9. [Impact Factor: 7.644]

 

2017

58. Atilla Biçer, Abul B.M.M.K. Islam, Serena Orlando, Edurne Gallastegui, Arnaud Besson, Rosa Aligué, Maria Jesús Pujol and Oriol Bachs. ChIP-Seq Analysis Identifies p27(Kip1)-Target Genes Involved in Cell Adhesion and Cell Signalling in Mouse Embryonic Fibroblasts. PLoS ONE. [Impact Factor: 2.806]

57. Ashok Amin and Abul B.M.M.K. Islam. Differential regulation of a tumor suppressor gene: MIG-6 in human Arthritis. American Journal of Arthritis Res.

56. Mandar Dave*, Abul B.M.M.K. Islam*, Roderick V. Jensen, Agueda Rostagno, Jorge Ghiso, Ashok R. Amin. Proteomic Analysis Shows Constitutive Secretion of MIF and p53-associated Activity of COX-2-/- Lung Fibroblasts. Genomic Proteomics and Bioinformatics (* equal contribution).

55. Mandar Dave, Abul B.M.M.K. Islam, Ashok R. Amin. The B-Box of HMGB1 amplifies nitric oxide production in human osteoarthritis-affected cartilage. American Journal of Arthritis Research.

54. Salwa Mohd. Mostafa, Md. Wahid Murad, Eusra Mohammad and Abul B.M.M.K. Islam. Intronic miRNA miR-3666 is a potential modulator of its host gene FOXP2 functions in neurodevelopment and may contribute to the pathogenesis of neurological disorders schizophrenia and autism. Journal of Applied Biotechnology & Bioengineering. 2017.

53. Anna Perearnau, Abul B.M.M.K. Islam, Edurne Gallastegui, Albert Jordan, Serena Orlando, Rosa Aligué, Maria Jesús Pujol and Oriol Bachs. p27Kip1, PCAF and PAX5 cooperate in the transcriptional regulation of specific target genes. Nucleic Acid Research; 45 (9), 5086-5099. [Impact Factor: 9.202]

 

2016

52. Elizaveta Benevolenskaya, Abul B.M.M.K. Islam, Habibul Ahsan, Muhammad G. Kibriya, Farzana Jasmine, Ben Wolff, Umaima Al-Alem, Elizabeth Wiley, Andre Kajdacsy-Balla, Virgilia Macias, Garth H. Rauscher. DNA methylation and hormone receptor status in breast cancer. Clinical Epigenetics. 2016;8:17. Published: 16th February 2016. [impact factor: 4.543]

51. Refat Sharmin and Abul B.M.M.K. Islam. Conserved antigenic sites between MERS-CoV and Bat-coronavirus are revealed through sequence analysis. Source Code Biol Med. 2016 Mar 9;11:3

50. Jessica Segalés; Abul B.M.M.K. Islam; Roshan Kumar; Qi-Cai Liu; Pedro Sousa-Victor; F. Jeffrey Dilworth; Esteban Ballestar; Eusebio Perdiguero; Pura Munoz-Canoves. Chromatin-wide and transcriptome profiling integration uncovers p38α MAPK as a global regulator of skeletal muscle differentiation. Skelet Muscle. 2016 Mar 15;6:9. [Impact Factor: 3.5]

49. Abul Islam, Mandar Dave, Sonia Amin; Roderick Jensen, Ashok Amin. Genomic, Lipidomic and Metabolomic Analysis of Cyclooxygenase-null Cells: Eicosanoid Storm, Cross Talk, and Compensation by COX-1. Genomics Proteomics Bioinformatics. 2016 Apr;14(2):81-93. [Impact Factor: 0.51]

48. Ashok R. Amin and Abul B.M.M.K Islam. Genomic Signaling in Human Osteoarthritis-Affected Chondrocytes by HMGB1: Induction of Pro-/Anti-Inflammatory and Matrix Depleting Activity. Journal of Molecular Signaling Updates. 2016; 1:11-23

47. Pablo Gómez-del Arco, Eusebio Perdiguero, Paula Sofia Yunes-Leites, Rebeca Acín-Pérez, Miriam Zeini, Antonio García-Gómez, Sreenivasan Krishnamoorthy, Miguel Jiménez-Alcázar, Jessica Segalés, Dolores López-Maderuelo, Beatriz Ornés, Luis Jesús Jiménez-Borreguero, Gaetano D´Amato, David Enshell-Seijffers, Bruce Morgan, Katia Georgopoulos, Abul B.M.M.K. Islam, Thomas Braun, José Luis de la Pompa, Johnny Kim, Jose Antonio Enríquez, Esteban Ballestar, Pura Muñoz-Cánoves, Juan Miguel Redondo. The Chromatin Remodelling Complex NuRD controls striated muscle identity and metabolic homeostasis. CELL Metabolism. 2016 May 10;23(5):881-92. [Impact Factor: 17.565]

46. Salwa Mohd. Mostafa and Abul B.M.M.K. Islam. An in silico approach predicted potential therapeutics that can confer protection from maximum pathogenic Hantaviruses. Future Virology. June 2016, 11:6(411-428). [Impact Factor: 1.011]

45. Shaily A. Amin and Abul B.M.M.K Islam. Diminished Genomics Signaling of Extravascular Coagulation and Fibrinolysis in Human Osteoarthritis (OA)-Affected Cartilage. Journal of Molecular Signaling Updates, 2016, 1:41-50

44. Alba Azagra, Lidia Román-González, Olga Collazo, Javier Rodríguez-Ubreva, Virginia de Yébenes, Burna Barneda-Zahonero, Jairo Rodríguez, Manuel de Moura, Joaquim Grego-Bessa, Irene Fernández-Duran, Abul B.M.M.K. Islam, Manel Esteller, Almudena Ramiro, Esteban Ballestar, and Maribel ParraIn vivo conditional deletion of HDAC7 reveals its requirement to establish proper B lymphocyte identity and development. Journal of Experimental Medicine. 2016. [Impact Factor: 11.240]

43. F Mateo, EJ Arenas, H Aguilar, J Serra-Musach, G Ruiz de Garibay, J Boni, M Maicas, S Du, F Iorio, C Herranz, A Islam, X Prado, A Llorente, A Petit, A Vidal, I Català, T Soler, G Venturas, A Rojo-Sebastian, H Serra, D Cuadras, I Blanco, J Lozano, F Canals, AM Sieuwerts, V de Weerd, MP Look, S Puertas, N García, AS Perkins, N Bonifaci, M Skowron, L Gómez-Baldó, V Hernández, A Martínez, M Martínez-Iniesta, X Serrat, J Cerón, J Brunet, MP Barretina, M Gil, C Falo, A Fernández, I Morilla, S Pernas, MJ Plà, X Andreu, MA Seguí, R Ballester, E Castellà, M Nellist, S Morales, J Valls, A Velasco, X Matias-Guiu, A Figueras, J Vicente Sánchez-Mut, M Sánchez-Céspedes, A Cordero, J Gómez-Miragaya, L Palomero, A Gómez, TF Gajewski, EEW Cohen, M Jesiotr, L Bodnar, M Quintela-Fandino, N López-Bigas, R Valdés-Mas, XS Puente, F Viñals, O Casanovas, M Graupera, J Hernández-Losa, S Ramón y Cajal, L García-Alonso, J Saez-Rodriguez, M Esteller, A Sierra, N Martín-Martín, A Matheu, A Carracedo, E González-Suárez, M Nanjundan, J Cortés, C Lázaro, MD Odero, JWM Martens, G Moreno-Bueno, MH Barcellos-Hoff, A Villanueva, RR Gomis and MA Pujana. Stem cell-like transcriptional reprogramming mediates metastatic resistance to mTOR inhibition. Oncogene. 19 December 2016; doi: 10.1038/onc.2016.427. [Impact Factor: 7.932]

2015

42. Chiara Di Vona, Daniela Bezdan, Abul B.M.M.K. Islam, Eulàlia Salichs, Nuria López-Bigas, Stephan Ossowski, and Susana de la Luna. Chromatin-wide profiling of DYRK1A reveals a role as a gene-specific RNA polymerase II CTD kinase. Molecular CELL  [Impact Factor: 14.464]

41. Renáta Váraljai*, Abul B.M.M.K. Islam*, Michael L. Beshiri, Jalees Rehman, Nuria Lopez-Bigas and Elizaveta V. Benevolenskaya. Increased mitochondrial function downstream from KDM5A histone demethylase rescues differentiation in pRB-deficient cells. [* equal contribution]. Genes and Development [Impact Factor:12.64]

40. Leonor Gama-Norton,    Eva Ferrando,    Cristina Ruiz-Herguido,    Zhenyi Liu, Jordi Guiu, Abul B. M. M. K. Islam, Sung-Uk Lee, Minhong Yan, Cynthia J. Guidos, Nuria López-Bigas, Takahiro Maeda, Lluis Espinosa, Raphael Kopan & Anna Bigas. Notch signal strength controls cell fate in the haemogenic endothelium.  Nature Communication [Impact Factor: 11.47]

39. Bruna Barneda-Zahonero, Olga Collazo, Irene Fernández-Duran, Jordi Serra-Musach, Alba Azagra, Abul B.M.M.K. Islam, Antonio Gómez, Lidia Román-González, August Vidal, Nuria Lopez-Bigas, Alberto Villanueva, Manel Esteller, Maribel Parra. HDAC7 is underexpressed in particular types of leukemia and lymphoma and its expression induces apoptosis and c-Myc downregulation. Cell Death & Disease. [Impact Factor: 5.177]

38. Mary Truscott, Abul B.M.M.K. Islam and Maxim V. Frolov. Novel regulation and functional interaction of polycistronic miRNAs. RNA. [Impact Factor: 4.622]

37. Daniel Cuadras, Xianshu Wang, Daniel Barrowdale, Gorka Ruiz de Garibay, Pablo Librado, Alejando Sánchez-Gracia, Julio Rozas, Núria Bonifaci, Lesley McGuffog, Vernon Pankratz, Abul B.M.M.K. Islam, ........... et al. and Miguel Angel Pujana. Assessing Associations between the AURKA-HMMR-TPX2-TUBG1 Functional Module and Breast Cancer Risk in BRCA1/2 Mutation Carriers. PLoS ONE  [Impact Factor: 3.53]

36. Modhusudan Shaha, Mohammad Ariful Islam, Abul B.M.M.K. Islam, Firoz Ahmed, Md. Majibur Rahman, Sabita Rezawana Rahman. Prediction of new conserved epitopes in protein 3D model to neutralize Influenza A virus strain H3N3 circulating in Bangladesh. International Journal of Current Research in Chemistry and Pharmaceutical Sciences.

2014

35. Lluís Millán-Ariño, Abul B.M.M.K. Islam, Andrea Izquierdo-Bouldstridge, Regina Mayor, Jean-Michel Terme, Neus Luque, Mónica Sancho, Núria López-Bigas and Albert Jordan. Mapping of six somatic linker histone H1 variants in human breast cancer cells uncovers specific features of H1.2. Nucleic Acids Research. [Impact Factor: 8.278]

34. Ashok R. Amin and Abul B.M.M.K Islam. Genomic Analysis and Differential Expression of HMG and S100A Family in Human Arthritis: Upregulated Expression of Chemokines, IL-8 and Nitric Oxide by HMGB1. DNA and Cell Biology. [Impact Factor: 2.344]. 

33. Helena Aguilar, Ander Urruticoechea, Pasi Halonen, Kazuma Kiyotani, Taisei Mushiroda, Xavier Barril, Jordi Serra-Musach1, Abul B.M.M.K. Islam, Livia Caizzi, Luciano Di Croce, Ekaterina Nevedomskaya, Wilbert Zwart, Josefine Bostner, Elin Karlsson, Gizeh Pérez Tenorio, Tommy Fornander, Dennis C. Sgroi, Rafael Garcia-Mata, Maurice P.H.M. Jansen, Nadia García, Núria Bonifaci, Fina Climent, María Teresa Soler, Alejo Rodríguez-Vida, Miguel Gil, Joan Brunet, Griselda Martrat, Laia Gómez-Baldó, Ana I. Extremera, Agnes Figueras, Josep Balart, Robert Clarke, Kerry L. Burnstein, Kathryn E. Carlson, John A. Katzenellenbogen, Miguel Vizoso, Manel Esteller, Alberto Villanueva, Ana B. Rodríguez-Peña, Xosé R. Bustelo, Yusuke Nakamura, Hitoshi Zembutsu, Olle Stål, Roderick L. Beijersbergen and Miguel Angel Pujana. VAV3 mediates resistance to breast cancer endocrine therapy. Accepted: Breast Cancer Research. [Impact Factor: 5.87]

32. Mary Truscott, Abul B.M.M.K. Islam, James Lightfoot, Núria López-Bigas and Maxim V. Frolov. An intronic microRNA links Rb/E2F and EGFR signaling. PLoS Genetics. [Impact Factor: 8.517]

31. Refat Sharmin and Abul B.M.M.K. Islam. A highly conserved YPKCDRA epitope in the RNA directed RNA polymerase of human coronaviruses can be used as epitope-based universal vaccine design. BMC Bioinformatics [IF: 3.02]

30. Md. Ashraful Islam Bhuiya and Abul B.M.M.K. Islam. Bioinformatics analysis identified distinct features between stress and non-stress related genes of different plants. Enliven:Bioinformatics.

29. Jordi Guiu, Dylan J.M. Bergen, Emma De Pater, Abul B.M.M.K Islam, Verónica Ayllón, leonor Gama-Norton, Cristina Ruiz-Herguido, Jessica González, Nuria López-Bigas, Pablo Menéndez, lluis espinosa, Anna Bigas. Identification of CDCA7 as a novel Notch transcriptional target involved in Hematopoietic Stem Cells emergence. (Journal of Experimental Medicine) [Impact Factor: 13.912].

28. Roser Vento-Tormo, Javier Rodríguez-Ubreva, Lorena Di Lisio, Abul B. M. M. K. Islam, Jose M. Urquiza, Henar Hernando, Nuria López-Bigas, Claire Shannon-Lowe, Nerea Martínez, Santiago Montes-Moreno, Miguel A. Piris and Esteban Ballestan. NF-kB directly mediates epigenetic deregulation of common microRNAs in Epstein-Barr virus-mediated transformation of B-cells and in lymphomas.  Nucleic Acids Research. [Impact Factor: 8.278]
 

2013

27. Mulero C, Ferres-Marco D, Abul B.M.M.K. Islam, Pecoraro M , Charneco C, Bellora N, Toll A, Gallardo F, Asensio E, López-Arribillaga E, Rodilla V, Iglesias M, Shih V, Alba M, Di Croce L, Hoffmann A, Villà-Freixa J, López-Bigas N, Keyes B, Domínguez M, Bigas A and Espinosa L. Chromatin-Bound IκBα Regulates a Subset of Polycomb Target Genes in Differentiation and Cancer. July 11, 2013. Cancer CELL. [Impact Factor: 28.2]

26. Aaron M Ambrus, Abul BMMK Islam, Katherine B. Holmes, Richard Suckling, Nam Sung Moon, Elizaveta V Benevolenskaya, Nuria Lopez-Bigas and Maxim V Frolov. Loss of E2F compromises mitochondrial function and protects cells from irradiation-induced apoptosis in Drosophila. Developmental CELL. [IF: 14.091]

25. Hernando H, Shannon-Lowe C, Abul B.M.M.K. Islam, Fatima Al-Shahrour, Javier Rodríguez-Ubreva, Virginia C. Rodríguez-Cortez, Biola M. Javierre, Cristina Mangas, Agustin F. Fernandez, Maribel Parra, Henry-Jacques Delecluse, Manel Esteller, Eduardo Lopez-Granados, Mario F. Fraga, Nuria Lopez-Bigas, and Esteban Ballestar. Hypomethylation of B cell specific genes during conversion of resting B cells to proliferating lymphoblasts is an early event in lymphomagenesis.  2013, 14:R3 . Genome Biology. [IF: 10.3]

24. Lorenzo de la Rica, Mireia García, Javier Rodríguez-Ubreva, Abul BMMK Islam, Jose M Urquiza, Henar Hernando, Jesper Christensen, Kristian Helin, Carmen Gómez-Vaquero and Esteban Ballestar. PU.1 targets Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation.Genome Biology. [IF: 10.3]

23. Román-González L, Barneda-Zahonero B, Collazo O, Rafati H, Abul B.M.M.K. Islam, Thomas Graf, Núria López-Bigas, Tokameh Mahmoudi and  Maribel Parra. Downregulation of HDAC7, an essential repressor of myeloid-inappropriate genes in B cells is required for transdifferentiation into macrophages. 2013 May; 9(5):e1003503. PLoS Genetics. [IF: 8.6]

22. Henar Hernando, Abul B. M. M. K. Islam, Javier Rodriguez-Ubreva, Claire Shannon-Lowe, Nuria Lopez-Bigas and Esteban Balle. Epstein Barr Virus-mediated transformation of B cells induces global chromatin changes independent to the acquisition of proliferation. Nucleic Acid Research. [IF: 8.278]

21. Mercedes Herrera, Abul B.M.M.K. Islam, Alberto Herrera, Paloma Martín, Ignacio Casal, Antonio García de Herreros5, Félix Bonilla1, Cristina Peña. Heterogeneity of cancer-associated fibroblast from human colon tumor shows specific prognostic gene expre expression signature. Clinical Cancer Research. [IF: 7.837]

20. Lorenzo de la Rica, José M Urquiza, David Gómez-Cabrero, Abul B. M. M. K. Islam, Nuria López-Bigas, Jesper Tegnér, René E.M. Toes, and Esteban Ballestar. Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression. 2013 Mar;41:6-16. Journal of Autoimmunity [IF: 7.37]


2012

19. Beshiri M, Holmes K, Richter W, Hess S, Abul B.M.M.K. Islam, Yan Q, Plante L, Gévry N, Lopez-Bigas K, Kaelin W and Benevolenskaya E. Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation. (PNAS Nov 6, 2012, 109 (45) 18499-18504). PNAS. [IF: 9.68]

18. Bayarmagnai B, Nicolay B, Abul B.M.M.K. Islam, Lopez-Bigas N and Frolov M. Drosophila GAGA Factor is required for full activation of the dE2F1-Yki/Sd transcriptional program. (2012 Nov 15;11(22):4191-202). Cell Cycle. [IF: 4.999]


2011


17. Abul B.M.M.K. Islam, Richter W, Lopez-Bigas N, Benevolenskaya, EV. Selective targeting of histone methylation. Cell Cycle (IF; 4.999)

16. Abul B.M.M.K. Islam, Richter WF, Jacobs LA, Lopez-Bigas N and Benevolenskaya EV Coregulation of Histone-modifying Enzymes in Cancer. PLoS One (IF: 4.61)

15. Truscott M, Abul B.M.M.K. Islam, Lopez-Bigas N and Frolov MV mir-11 limits the proapoptotic function of its host gene, dE2f1. Genes and Development (IF: 14.198).

14. Nicolay B, Bayarmagnai B*, Abul B.M.M.K. Islam*, Lopez-Bigas N and Frolov MV. Cooperation between dE2F1 and Yki/Sd defines a distinct transcriptional program necessary to bypass cell cycle exit. Genes & Development (IF:14.198). (* equal contribution)


2010

13. Beshiri ML, Abul B.M.M.K. Islam, DeWaal DC, Richter WF, Love J, Lopez-Bigas N, Benevolenskaya EV. Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets. JoVE (IF 1.19; >15,000 visit to video protocol)

12. Ferreiro I, Joaquin M, Abul B.M.M.K. Islam, Gonzalo Gomez, Montserrat Barragan, Luis Lombardia, Orlando Dominguez, David G. Pisano, Nuria Lopez-Bigas, Angel R. Nebreda and Francesc Posas. Whole genome analysis of p38 SAPK-mediated gene expression upon stress. BMC Genomics,  (IF: 4.07)

11. Aguilar H, Sole X, Bonifaci N, Serra-Musach J, Abul B.M.M.K. Islam, Lopez-Bigas N, Méndez-Pertuz M, Beijersbergen RL, Lázaro C, Urruticoechea A, Pujana MA. Biological reprogramming in acquired resistance to endocrine therapy of breast cancer. Oncogene. (IF: 6.373). 

10. Gundem G, Perez-Llamas C, Jene-Sanz A, Kedzierska A, Abul B.M.M.K. Islam, Deu-Pons J, Furney S and Lopez-Bigas N. IntOGen: Integration and data-mining of multidimensional oncogenomic data. Nature Methods(IF:19.276) .


2009-2004

9. Shuvra Kanti Dey, Hideaki Shimizu, Tung Gia Phan, Yuko Hayakawa, Abul Islam, Abul Faiz Mohammad Salim, Anisur Rahman Khan, Masashi Mizuguchi, Shoko Okitsu, Hiroshi Ushijima. Molecular epidemiology of adenovirus infection among infants and children with acute gastroenteritis in Dhaka City, Bangladesh. 2009. Infection, Genetics and Evolution. (IF: 3.128)

8. Saeid Abroun, Ken-ichiro Otsuyama, Karim Shamsasenjan, Abul Islam, Jakia Amin, Michio M Kawano. Galectin-1 supports the survival of CD45RA(-) primary myeloma cells in vitro. 2008. British Journal of Hematology. (2008 Sep;142(5):754-65. ). (IF: 4.941).

7. Shuvra Kanti Dey, Abul Islam, Masashi Mizuguchi, Shoko Okitsu, Hiroshi Ushijima. Epidemiological and molecular analysis of astrovirus gastroenteritis in Dhaka City, Bangladesh. Journal of Tropical Pediatrics. Dec 2008 (IF: 1.388)

6. Khademul Islam, Md. Ibrahim Khalil, Chowdhury Rafiqul Ahsan and Mahmuda Yasmin and Jamalun Nessa. 2007. Analysis of immue responses against Helicobacter pylori in rabbit. World J of Gastroenterology; 13(4):600-606. (IF: 2.092)

5. Md. Shahidul Islam, ABM Md. Khademul Islam, Chowdhury Rafiqul Ahsan, Mahmuda Yasmin and Jamalun Nessa. 2006. Seroprevalence of Helicabacter pylori Among Underprivileged Bangladeshi Children: Case Study in a Day-care Center. Bangladesh Journal of Microbiology, 23(1): 24-28.

4. Farhana Rahman, ABM Md. Khademul Islam, Jamalun Nessa, Chowdhury Rafiqul Ahsan and Mahmuda Yasmin. 2005. Correlation in Prevalence, Risk Factors and Serological Detection of Helicobacter pylori by Different Techniques. Bangladesh Journal of Microbiology, 22(2):152-157.

3. ABM Md. Khademul Islam, Mahmuda Yasmin, Jamalun Nessa, Chowdhury Rafiqul Ahsan. 2005. Helicobacter pylori infection in Bangladeshi population: Serodiagnosis, Seroprevalence and Risk factors. The Dhaka University J. of Biological Sciences. 14(1):1-8.

2. Jakia Amin, Abul Bashar Mir Md. Khademul Islam and Md. Majibur Rahman.2004. Prevalence and antibiotic resistance of pathogenic microorganisms of poultry products and associated manpower. Bangladesh Journal of Microbiology. 21(2):101-103.

1. ABM Md. Khademul Islam, Jamalun Nessa, Mahmuda Yasmin, Chowdhury Rafiqul Ahsan. 2002. Seroprevalence of S. flexneri 2a infection in Bangladeshi population and analysis of its relationship with sex, age, blood group, acidity. Bangladesh Journal of Microbiology, 19(1 & 2): 73-77.

 

Abstract publications and presentation (selected):

 

  1. Suprovath Kumar Sarker, Mst. Noorjahan Begum, Md Tarikul Islam, Nusrat Sultana, Rokeya Begum, Syed Saleheen Qadri, Abul B.M.M.K. Islam, Abu Ashfaqur Sajib, Sharif Akhteruzzaman, Firdausi Qadri and Kaiissar Mannoor. Analysis of Thyroid Peroxidase Gene Mutations in Patients with Congenital Thyroid Dyshormonogenesis. Paper Number 218. Human Genetics Society of Australasia (HGSA), 42 Annual Scientific Meeting, Oral Presentation, (Session: ASIEM SIG Meeting, Aug 4, 2018), 4-7 August, Sydney, Australia.
  2. Suprovath Kumar Sarker, Mst. Noorjahan Begum, Md Tarikul Islam, Nusrat Sultana, Rokeya Begum, Syed Saleheen Qadri, Abul B.M.M.K. Islam, Abu Ashfaqur Sajib, Sharif Akhteruzzaman, Firdausi Qadri and Kaiissar Mannoor. Poster presentation (P116). Genotyping of beta-thalassemia using loop-mediated isothermal amplification (LAMP) in Bangladesh. Human Genetics Society of Australasia (HGSA), 42 Annual Scientific Meeting, 4-7 August, Sydney, Australia.
  3. Abul BMMK Islam, Md Sajedul Islam, Marwah Karim and Md. Wahid Murad. Identification of novel Zika virus miRNAs associated with viral pathogenesis through alteration of host genes that are involved in immune response and neurological functions. Conference to Promote Safe and Secure Science in the Middle East/North Africa & South/Southeast Asia was organised from 5 to 9 February 2018. Malaysia. Oral presentation.
  4. Abul BMMK Islam, Váraljai R, Beshiri ML and Benevolenskaya EV. Histone demethylase KDM5A depletion rescues differentiation in pRB-deficient cells by enhanced mitochondrial function. King Abdullah University of Science and Technology (KAUST), KSA, 12-15 February 2017. Oral Presentation.
  5. Abul BMMK Islam and Salwa Mohd Mostafa. Conference on, "Infectious Diseases: Biology to Intervention Strategies". C
  6. Abul BMMK Islam. Promise of bioinformatics in pharmaceutics and diagnostics. International Conferences on Biotechnology, on application of Biotechnology in addressing the development need of Bangladesh. Organized by Committee of Action for Research, Extension & Services (CARES). Venue: Dhaka, Bangladesh. Date: 25-26 May 2013.
  7. Herrera M, Herrera A, B.M.M.K. Islam A, Bonilla F, Pena C. Heterogeneity of cancer-associated fibroblasts from human primary colon tumors in their pro-tumorogenic abilities on calcer cells. The scientific meeting of young investigator of the thematic network of cooperative investigation in cancer [III Encuntro Cientifico Jovenes Investigadores de la Red Tematica de investigacion cooperativa en cancer (RTICC)] conference. 9-20 November 2012, Barcelona, Spain.
  8. Bruna Barneda-Zahonero, Olga Collazo, Abul B.M.M.K. Islam, Antonio Gomez-Moruno, Lidia Roman-Gonzalez, Nuria Lopez-Bigas, Manel Esteller and Maribell Pararra. lack of the transcriptional repressor histone deacetylase 7 induces lymphocyte oncogenic transformation. Idibell Cancer Conference on Epigenetics in Lymphocytes Biology and Disease (Barcelona, Spain: September 13-14, 2012). Page 88, abstract no. 27.
  9. Lidia Roman-Gonzalez, Bruna Barneda-Zahonero, Olga Collazo, Haleh Rafati, Abul B.M.M.K. Islam, Lars H. Bussmann, Thomas Graf, Nuria Lopez-Bigas, Tokameh Mahmoudi and Maribel Parra. HDAC7 is a repressor of myeloid genes in pre-B cells whose downregulation is required for transdifferentiation into macrophages. Idibell Cancer Conference on Epigenetics in Lymphocytes Biology and Disease (Barcelona, Spain: September 13-14, 2012). Page 89, abstract no. 28
  10. Lorenzo de la Rica, Jose M Urquiza, Abul B.M.K. Islam, Mireia Gracia, Carmen Gomez-Vaquero, Nuria Lopez-Bigas and Esteban Ballestar. DNA methylation regulates the differentiation process during osteogenesis from myeloid monocytes/macrophages. Idibell Cancer Conference on Epigenetics in Lymphocytes Biology and Disease (Barcelona, Spain: September 13-14, 2012). Page 90, abstract no. 29.
  11. Roser Vento, Abul B.M.K. Islam, Henar Hernando, Javier Rodriguez-Ubreva, Claire Shannon-Lowe, Jose m. Urquiza, Santiago Montes-Moreno, Miguel A. Piris, Nuria Lopez-Bigas and Esteban Ballester. Roles of miRNA in a B cell proliferation model. Idibell Cancer Conference on Epigenetics in Lymphocytes Biology and Disease (Barcelona, Spain: September 13-14, 2012). Page 91, abstract no. 30
  12. Galina F. Khramtsova, Abul B.M.M.K. Islam, Andrey I. Khramtsov, Phoebe Lyman, Liao Chuanhong, Alba Jene-Sanz, Walmy E. Sveen, Dezheng Huo, Nuria Lopez-Bigas, Elizaveta V. Benevolenskaya, Olufunmilayo I. Olopade. EZH2 expression in different subtypes of human breast cancer. American Association for Cancer Research Annual Meeting. March 31- April 4, 2012. Chicago, USA. Abstract no. 1061. Cancer Research, April 15, Vol-72, issue-8, supplement-1.
  13. Beshiri, M.L., A.B.M.M.K. Islam, E.V. Benevolenskaya. 2012. Studying the histone demethylase RBP2 during RB-mediated differentiation. UIC Cancer Center Research Forum. USA.
  14. Benevolenskaya, E.V., M.L. Beshiri, A.B.M.M.K. Islam, N. Lopez-Bigas. August 14-18, 2012. pRB function during differentiation is linked to epigenetic mechanisms. Cold Spring Harbor Laboratory Meeting on Mechanisms & Models of Cancer. Abstracts no.: 24. USA.
  15. Beshiri, M.L., K.B Holmes, W.F Richter, A.B.M.M.K. Islam, L. Plante, L. Litovchick, N. Gévry, N.Lopez-Bigas, W.G. Kaelin Jr., E.V. Benevolenskaya. 2012. Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation. Cold Spring Harbor Laboratory Meeting on Mechanisms & Models of Cancer. Abstracts no.: 26.  USA.
  16. Beshiri, M.L., Abul B.M.M.K. Islam, N.Lopez-Bigas, E.V. Benevolenskaya.  October 12, 2012. The function of the tumor suppressor pRB during differentiation is linked to epigenetic mechanisms. 10th Annual CBC Symposium. Northwestern University, Chicago, USA.
  17. Aaron M. Ambrus, Abul B.M.M.K. Islam, Mary Truscott, Núria López-Bigas, Maxim V. Frolov. Lack of E2F activity protects cells from irradiation-induced cell death. 53rd Annual Drosophila Research Conference, Chicago, USA. March 7-11, 2012, Chicago, USA. Plenery presentation: Abstract No. 61. Page: 143. http://www.drosophila-conf.org/2012/
  18. Battuya Bayarmagnai, Brandon Nicolay, Abul Islam, Nuria Lopez-Bigas, Maxim Frolov. Drosophila GAGA Factor is required for full activation of dE2F1 and Yki/Sd common targets in the wing. 53rd Annual Drosophila Research Conference, Chicago, USA. March 7-11, 2012, Chicago, USA. Poster presentation: Abstract No. 756C.
  19. Beshiri, M.L., Abul B.M.M.K. Islam, N.Lopez-Bigas, E.V. Benevolenskaya. October 29-31, 2012. pRB function during differentiation is linked to epigenetic mechanisms. Cell Symposia Hallmarks of Cancer Meeting. Westin Market, San Francisco. USA.
  20. Mary Truscott, Abul Islam, Núria López-Bigas, Maxim Frolov. mir-11 limits the pro-apoptotic function of its host gene, dE2f1. 53rd Annual Drosophila Research Conference, Chicago, USA. March 7-11, 2012, Chicago, USA. Poster presentation: Abstract No. 812B.
  21. Aaron Ambrus, Abul Islam, Nuria Lopez-Bigas, Maxim Frolov. Loss of E2F compromises mitochondrial function and protects cells from irradiation-induced apoptosis in Drosophila.  Model organism to human biology. Cancer Genetics. June 17-20, 2012. Washington. 2012. Abstract No. 93. http://www.mohb.org/2012/book/index.html#/61/zoomed USA.
  22. Abul Islam, Benevolenskaya E, Lopez-Bigas N. Bioinformatics of Human and Animal genomics. Genome-Wide Isoform Specific KDM5A/JARID1A/RBP2 Location Analysis Reveals Contribution of Chromatin-Interacting PHD Domain in Protein Recruitment to binding Sites. Cold Spring Harbor Asia Conference, China. November 14 – November 18, 2011 Oral presentation.
  23. Aaron M. Ambrus, Abul B.M.M.K. Islam, Richard J. Suckling, Vanya I. Rasheva, Mary Truscott, Núria López-Bigas and Maxim V. Frolov. Lack of E2F activity protects cells from irradiation-induced cell death. Second International Rb meeting, 17-18 Novvember 2011, Toronto, Canada. Abstract No. 30.
  24. Truscott M, Islam A, Lopez-Bigas N, Frolov M. mir-11 limits the pro-apoptotic function of its host gene, dE2f1 Second International Rb Meeting, Toronto, Canada. November 17-18, 2011. Abstract No. 34.
  25. Truscott M, Islam A, Lopez-Bigas N, Frolov M. mir-11 limits the pro-apoptotic function of its host gene, dE2f1 Cold Spring Harbor Cell Death Meeting October 11-15, 2011. USA.
  26. Abul Islam, N. Lopez-Bigas, E. Benevolenskaya. Genome-wide isoform specific KDM5A/JARID1A/RBP2 location analysis reveals contribution of chromatin-interacting PhD domain in protein recruitment to binding sites. Abstract published In: The EMBO meeting, advancing in the life science conference, 4-7 September, 2010, Barcelona, Spain.
  27. G. Gundem, C. Perez-LIamas, A. Jene-Sanz, A. Kedzierska, A. Islam, J. Deu-Pons, S. Furney, N. Lopez-Bigas. Abstract published In: The EMBO meeting, advancing in the life science conference, 4-7 September, 2010, Barcelona, Spain.
  28. Truscott M, Islam A, Reinke C, Lopez-Bigas N, Carthew RW, Frolov M. Characterization of the miR-11 microRNA. Presented at the Keystone Symposium on RNA Silencing: Mechanism, Biology and Application January 14-19, 2010. Abstract No. 360. USA
  29. Abul Bashar Mir Md. Khademul Islam, Ibrahim Khalil, Chowdhury Rafiqul Ahsan, Mahmuda Yasmin and Jamalun Nessa.  Analysis of Immune Responses Against Helicobacter pylori in Rabbit. 2006. Abstract published in the first International Congress of Central Asia Infectious Diseases (ICCAID 2006) was in Bishkek, Kyrgyz Republic. Between 30 October-02 November 2006. Page 112, article No. P105.
  30. Khademul Islam, Ken-ichiro Otsuyama, Saeid Abroun, Jakia Amin, Karim Shamsasenjan and Michio M. Kawano. 2007. Expression of Chemokine Receptors in Primary Myeloma Cells. Abstract published and presented In: abstract book of 46th Chugoku-Shikoku Meeting in JSH. Article no. 10, page 16. Place: Izumo City, Shimane, Japan. March 2-3, 2007.
  31. Jakia Amin, Ken-ichiro Otsuyama, Khademul Islam, Saeid Abroun, Karim Shamsasenjan, and Michio M. Kawano. 2007. NF-κB Activity in Myeloma Cell Lines. Abstract published In: abstract book of 46th Chugoku-Shikoku Meeting in JSH. Article no. 11, page 17. Place: Izumo City, Shimane, Japan. March 2-3, 2007.
  32. Jakia Amin, Ken-ichiro Otsuyama, Abul Islam, Karim Shamsasenjan, Mohd Shamim Iqbal, Saeid Abroun, and Michio M. Kawano. 2007. The correlation between constitutive NF-kB activity and CD54 expression in human myeloma cell. Abstract published In: abstract book of 69th annual meeting of Japanese society of haematology (JSH). Article no. OS-49-4, page 231. Place: Yokohama, Japan. October 10-12, 2007.
  33. Abul Islam, Ken-ichiro Otsuyama, Jakia Amin, Karim Shamsasenjan, Mohd Shamim Iqbal, Saeid Abroun, and Michio M. Kawano. 2007. Biological significance of chemokine receptors expression on human myeloma cells. Abstract published In: abstract book of 69th annual meeting of Japanese society of haematology (JSH). Article no. OS-17-2, page 177. Place: Yokohama, Japan. October 10-12, 2007.
  34. Karim Shamsasenjan, Ken-ichiro Otsuyama, Saeid Abroun, Mohd Shamim Iqbal, Jakia Amin, Abul Islam, and Michio M. Kawano. 2007. IL-6-induced down-regulation of CD33 expression in human myeloma cells. Abstract published In: abstract book of 69th annual meeting of Japanese society of haematology (JSH). Article no. OS-16-3, page 176. Place: Yokohama, Japan. October 10-12, 2007.
  35. Ken-ichiro Otsuyama, Jakia Amin, Abul Islam, Karim Shamsasenjan, Mohd Shamim Iqbal, Saeid Abroun, and Michio M. Kawano. 2007. The mechanism of PPARb activity to suppress the constitutive NF-kB activity in human myeloma cells. Abstract published In: abstract book of 69th annual meeting of Japanese society of haematology (JSH). Article no. OS-17-5, page 178. Place: Yokohama, Japan. October 10-12, 2007.
  36. Mohd Shamim Iqbal, Ken-ichiro Otsuyama, Karim Shamsasenjan, Saeid Abroun, Jakia Amin,Abul Islam, and Michio M. Kawano. 2007. Biological significance of CD56 expression on human myeloma cells. Abstract published In: abstract book of 69th annual meeting of Japanese society of haematology (JSH). Article no. PS-1-53, page 231. Place: Yokohama, Japan. October 10-12, 2007.
  37. Ken-ichiro Otsuyama, Jakia Amin, Saeid Abroun, Abul Islam Karim Shamsasenjan, Mohd Shamim Iqbal, Michio M. Kawano. 2007. The PPARß activation mechanism which suppresses the constituitive NF-kB activity in human myeloma cell lines. Abstract published In: abstract book of American Society of Hematology 49th Annual conference. Place: Atlanta, USA. December 8-12, 2007.
  38. Jakia Amin, Ken-ichiro Otsuyama, Abul Islam, Karim Shamsasenjan, Mohd Shamim Iqbal and Michio M. Kawano. 2007. The mechanism of Constitutive NF-κB Activity in myeloma Cell Lines. Abstract published In: abstract book of American Society of Hematology 49th Annual conference. Place: Atlanta, USA. December 8-12, 2007.
  39. Karim Shamsasenjan, Ken-ichiro Otsuyama, Mohd Shamim Iqbal, Saeid Abroun, Jakia Amin, Abul Islam, Michio M. Kawano. 2007. IL-6 induced c-myc down regulates the expression of CD33 in CD33(+) myeloma cell lines. Abstract published In: abstract book of American Society of Hematology 49th Annual conference. Place: Atlanta, USA. December 8-12, 2007.
  40. Mohd Shamim Iqbal, Ken-ichiro Otsuyama, Karim Shamsasenjan, Saeid Abroun, Jakia Amin, Abul Islam, Michio M. Kawano. 2007. The expression of CD56 is frequently accompanied with the expression of neuronal cell markers and its down-regulation is induced by IL-6 in human myeloma cells. Abstract published In: abstract book of American Society of Hematology 49th Annual conference. Place: Atlanta, USA. December 8-12, 2007.
  41. Abul Islam, Ken-ichiro Otsuyama, Jakia Amin, Saeid Abroun, Karim Shamsasenjan, Mohd Shamim Iqbal, Michio M. Kawano. 2007. SDF-1 is responsible for the constitutively high NF-kB activity in human myeloma cells. Abstract published In: abstract book of American Society of Hematology 49th Annual conference. Place: Atlanta, USA. December 8-12, 2007.
  42. Md. Ibrahim Khalil, ABM Md. Khademul Islam, Chowdhury Rafiqul Ahsan and Mahmuda Yasmin and Jamalun Nessa. 2006. Analysis of immue responses against Helicobacter pylori in rabbit. Abstract published and presented In: Bangladesh Society of Microbiologist’s 22nd Annual conference. Place: Dhaka, Bangladesh.
  43. Saeid Abroun, Ken-Ichiro Otsuyama, Karim Shamsasenjan, Khademul Islam, Jaki Amin, Hideki Asaoku, Michio M. Kawano. 2006. Gelatin-Coated Insert-Well Culture Markedly Improved In Vitro Culture of Primary Myeloma Cells. Abstract published In: abstract book of American Society of Hematology 48th Annual conference. Article no. 5020. Place: Orlando, USA.
  44. Ken-ichiro Otsuyama, Jakia Amin, Emi Uchida, Saeid Abroun, Karim Shamsasenjan, Khademul Islam, Hideki Asaoku, Michio M. Kawano. 2006. Baicalein Combined with Dexamethasone Can Induce the Marked PPARß-Mediated Suppression of Growth and Survival in Human Myeloma Cells. Abstract published In: abstract book of American Society of Hematology 48th Annual conference. Article no. 5085. Place: Orlando, USA.
  45. Jakia Amin, Ken-ichiro Otsuyama, Emi Uchida, Saeid Abroun, Karim Shamsasenjan, Khademul Islam, Michio M. Kawano. 2006. The Potentials of Constitutive NF-κB Activation in U266 Cell Lines. Abstract published In: abstract book of American Society of Hematology 48th Annual conference. Article no. 5008. Place: Orlando, USA.
  46. Karim Shamsasenjan, Saeid Abroun, Shngqin Liu, Jakia Amin, Khademul Islam, Ken-ichiro Otsuyama, Michio M. Kawano. 2006. IL-6 Down-Regulates CD33 Expression in Primary Myeloma Cells as Well as Myeloma Cell Lines. Abstract published In: abstract book of American Society of Hematology 48th Annual conference. Article no. 5009. Place: Orlando, USA.
  47. Abul Bashar Mir Md. Khademul Islam and SI Khan. 2005. A comparative assessment of phenotypic and genotypic characterization of Shigella spp. isolated from food and clinical samples. Abstract published and presented In: Bangladesh Society of Microbiologist’s 21st Annual conference. Article no. 3.14. Place: Mymenshing, Bangladesh.
  48. ABM Md. Khademul Islam, Mahmuda Yasmin, Jamalun Nessa, Chowdhury Rafiqul Ahsan. 2004. Seroprevalence, Serodiagnosis and Risk factor Analysis for Helicobacter pylori infection in Bangladeshi population. Abstract published and presented In: Bangladesh Society of Microbiologist’s 20th Annual conference. Page: 52. Place: Dhaka, Bangladesh.

Course offered:

Fundamentals of Genetic Engineering & Biotechnology
Physiology & Biochemistry of living organisms-I
Virology
Biochemistry & Molecular Biology of Diseases
Biotechnology of Microbial Systems
Genomics Proteomics Bioinformatics
Computational Genomics and Systems Biology
Seminar presentation
Physiology-I/II (Human)
Bioinformatics
Genomics
Molecular Biology and Biotechnology
Immunopharmacology
Pharmaceutical Biotechnology
Statistics and Bioinformatics
Marine Biotechnology & Therapeutics

Practical/Lab experiments

 

Thesis Supervision (Bachelor/Masters/M.Phil/PhD)

Bachelor Research Projects:

  1. Identification of Asr (Abscisic acid, stress and ripening) gene in jute (Corchorus olitorius) variety O-72, and elucidation of it's temporal expression pattern in response to salt stress. Student: Shamira Tabrejee. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2012. (Co-supervisor: Prof. Haseena Khan, Dept. Biochemistry and Molecular biology, DU).
  2. Prediction of effective small molecules against Streptococcus extracellular protease SepM. Student: Eusra Mohammad. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2013.
  3. Structure based docking prediction of small molecule against Vibrio cholerae toxin-antitoxin system. Student: Md. Saiful Alam. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2013.
  4. Identification of Prognostic Gene Expression Signature Based On The Functional Heterogeneity Of Cancer-Associated-Fibroblasts (CAF) From Colon Tumors. Student: Mst. Shabrina Khanom. Department of genetic Engineering and Biotechnology, Shahjalal University of Science and Technology. Bachelor Project 2013. (In association with: Zobada Kanak Khan, SUST).
  5. An Integrated Approach to Identify Novel Driver Genes and Their Regulatory Mechanisms in Osteoarthritis. Student: Sanjana Chowdhury Orin. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2014.
  6. In silico epitope-based universal vaccine designing against envelope glycoprotein of Hantavirus. Student: Salwa Mohd. Mostafa. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2014.
  7. An Integrated Experimental and in silico Approach to Elucidate the Role of Viral miRNA for Their Survival in Host. Student: Sajedul Islam, Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2015.
  8. From Differentiation to Cancer – Decoding the Functional Roles of Long Intergenic Non-coding RNAs (lincRNAs). Student: Md. Wahid Murad, Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2016.
  9. Association of Bidirectional promoter in cancer. Student: Abdullah Al-Kamran, Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2017.
  10. Role of Epigenetic modifications in splicing. Student: Rafeed Rahman Turjya. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2018 (ongoing)

Master thesis:

  1. Association of CD1A & CD1E gene polymorphism in Guillain–Barré syndrome in Bangladeshi population. Student: Iffat Jahan. Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2013. (Co-supervisor:  Dr. Jahirul Islam. ICDDRB).
  2. Analysis of mutation in Selenocysteine Insertion Sequence Binding Protein 2 (SBP2) in inherited hypothyroidism patients of Bangladesh. Student: Ahmed Shah, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2014. (In association with Prof. Dr. Md Aftab Uddin, GEB, DU).
  3. A Systems Biology approach to delineate the modulatory functions of intronic microRNA miR-933 and miR-1183 on their respective host gene ATF2 and SP4. Student: Eusra Mohammad, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2014.
  4. In silico epitope-based universal vaccine designing against polyprotein of Norovirus. Student: Mahnaz Fariba, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2014. (in association with Prof. Dr. Anwarul Azim Akhand, GEB, DU).
  5. Immunoinformatics Approach for Designing and Modeling of Epitope- Based Vaccine Against Zika Virus E Protein. Student: Habiba Afrin, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2015.
  6. A Systems Biology approach delineates models depicting interactions between intronic miR-3666, its host gene FOXP2 and their targets in neurodevelopmental processes and related disorders. Student: Salwa Mohd. Mostafa, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2015.
  7. Predicted Zika Virus miRNAs Associated with Viral Pathogenesis through Alteration of Host Genes Involved in Immune Response and Neurological Functions. Student: Sajedul Islam, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2016.
  8. Elucidation of the Effect of Mutations in Non-coding RNAs in Cancer. Student: Md. Wahid Murad. Department of genetic Engineering and Biotechnology, University of Dhaka. MS thesis 2017.
  9. Whole Genome Sequence of Acute Hepatopancreatic Necrosis Disease (AHPND) positive Vibrio parahaemolyticus strain isolated from shrimp (Penaeus monodon) of south-west region of Bangladesh. Student: Shawon Ahmed (Dept. of Fisheries, DU), Abdullah Al Kamran (GEB, DU), 2018 (ongoing).

MPhil/PhD:

  1. Mutations and polymorphisms detection in marker genes of cervical carcinoma in Bangladeshi patients. Student: Fatima Tuj Zohura, Department of genetic Engineering and Biotechnology, University of Dhaka. M.Phil. thesis (passed: 2018)
  2. The Molecular Basis of the Pelvi-Ureteric Junction (PUJ) Obstruction in Patients with Hydronephrosis in Children. Student: Prof DR. Sadrul Alam, Department of genetic Engineering and Biotechnology, University of Dhaka. PhD thesis (Ongoing).

 

  • Young Scientist 2013 award, Bangladesh Academy of Science (BAS) and The World Academy of Sciences (TWAS), Italy. Award handed-over by Prime Minister of the country.
  • Samson H Chowdhury memorial award for your scientist, 2017. Award for the contribution to the biological science in the country. Award handed-over by Health Minister of the country.
  • Premi del Consell Social a la transferencia de Coneixement, 2012 award (Knowledge and Technology Transfer award from social council) from Spanish (Catalunya) Govt. and Universitat Pompeu Fabra. (For research findings/knowledge that successfully transferred to industry).
  • FI-Modalitat-B, Genaralitat Fellowship from Spanish Government (Catalan) for PhD study in University Pompeu Fabra, Spain.
  • Human Frontier Science Program (HFSP) grant fellowship for PhD study.
  • AGAUR Modalitat-A:  Fellowship from Spanish Government (Catalan) to do research in the Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, USA.
  • EMBO fellowship to participate EMBO Practical course on Networks in Biology analysis, modeling and reverse engineering, Bologna, Italy (22-25 September, 2009).
  • “Honours Scholarship” for excellent academic performance in Master degree in Yamaguchi University, Japan (2006-2007).
  • “Sushikha Barsha-2003 Gold Medal award” Dhaka University, Bangladesh, for outstanding performance (1st class 1st) in B.Sc. in this university. Award handed-over by Prime Minister of the country.
  • “Provost Award 2003” for achieving highest grade result in B.Sc.
  • Government Distinct Merit Scholarship for M.S. study at Dhaka University. (2004).
  • “Sumitomo Corporation, Japan” scholarship (for 4 times) for outstanding academic performance in the faculty of Biological Science, University of Dhaka.

Medical Biotechnology (Genomics & Molecular Biology of Disease): Epigenetic, Genetic and Immunologic mechanisms of human diseases, specially cancer, arthritis, diabetes and metabolic disorders; and bacterial pathogenesis. Epigenetic drug target and drug discovery. Mechanism and drug/vaccine discovery against infectious disease.

Bioinformatics, Computational and Systems Biology: In Silico/computer aided drug design (CADD); Vaccine design. Optimization, analysis and management of Next Generation (NGS)/Third generation sequence data (whole genome sequencing, exonm seq, ChIPseq, RNAseq, Single Cell RNAseq, MethylomeSeq etc), HiC, microarray, Chip-on-chip, ChIP-tiling and other high-throughput genomic and proteomic data; Data integration, mining and visualization; bioinformatic study of Epigenetic mechanisms in cancer; drug target identification, biological PPIN/GRN/PCN/metabolic network; MALDI/NMR etc proteomic data analysis for marker identification for cancer diagnosis; prediction of structure based regulatory elements in genomics and proteomic data; Metagenomics;

Course offered:

Fundamentals of Genetic Engineering & Biotechnology
Physiology & Biochemistry of living organisms-I
Virology
Biochemistry & Molecular Biology of Diseases
Biotechnology of Microbial Systems
Genomics Proteomics Bioinformatics
Computational Genomics and Systems Biology
Seminar presentation
Physiology-I/II (Human)
Bioinformatics
Genomics
Molecular Biology and Biotechnology
Immunopharmacology
Pharmaceutical Biotechnology
Statistics and Bioinformatics
Marine Biotechnology & Therapeutics

Practical/Lab experiments

 

Thesis Supervision (Bachelor/Masters/M.Phil/PhD)

Bachelor Research Projects:

  1. Identification of Asr (Abscisic acid, stress and ripening) gene in jute (Corchorus olitorius) variety O-72, and elucidation of it's temporal expression pattern in response to salt stress. Student: Shamira Tabrejee. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2012. (Co-supervisor: Prof. Haseena Khan, Dept. Biochemistry and Molecular biology, DU).
  2. Prediction of effective small molecules against Streptococcus extracellular protease SepM. Student: Eusra Mohammad. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2013.
  3. Structure based docking prediction of small molecule against Vibrio cholerae toxin-antitoxin system. Student: Md. Saiful Alam. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2013.
  4. Identification of Prognostic Gene Expression Signature Based On The Functional Heterogeneity Of Cancer-Associated-Fibroblasts (CAF) From Colon Tumors. Student: Mst. Shabrina Khanom. Department of genetic Engineering and Biotechnology, Shahjalal University of Science and Technology. Bachelor Project 2013. (In association with: Zobada Kanak Khan, SUST).
  5. An Integrated Approach to Identify Novel Driver Genes and Their Regulatory Mechanisms in Osteoarthritis. Student: Sanjana Chowdhury Orin. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2014.
  6. In silico epitope-based universal vaccine designing against envelope glycoprotein of Hantavirus. Student: Salwa Mohd. Mostafa. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2014.
  7. An Integrated Experimental and in silico Approach to Elucidate the Role of Viral miRNA for Their Survival in Host. Student: Sajedul Islam, Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2015.
  8. From Differentiation to Cancer – Decoding the Functional Roles of Long Intergenic Non-coding RNAs (lincRNAs). Student: Md. Wahid Murad, Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2016.
  9. Association of Bidirectional promoter in cancer. Student: Abdullah Al-Kamran, Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2017.
  10. Role of Epigenetic modifications in splicing. Student: Rafeed Rahman Turjya. Department of genetic Engineering and biotechnology, University of Dhaka. Bachelor Project 2018 (ongoing)

Master thesis:

  1. Association of CD1A & CD1E gene polymorphism in Guillain–Barré syndrome in Bangladeshi population. Student: Iffat Jahan. Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2013. (Co-supervisor:  Dr. Jahirul Islam. ICDDRB).
  2. Analysis of mutation in Selenocysteine Insertion Sequence Binding Protein 2 (SBP2) in inherited hypothyroidism patients of Bangladesh. Student: Ahmed Shah, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2014. (In association with Prof. Dr. Md Aftab Uddin, GEB, DU).
  3. A Systems Biology approach to delineate the modulatory functions of intronic microRNA miR-933 and miR-1183 on their respective host gene ATF2 and SP4. Student: Eusra Mohammad, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2014.
  4. In silico epitope-based universal vaccine designing against polyprotein of Norovirus. Student: Mahnaz Fariba, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2014. (in association with Prof. Dr. Anwarul Azim Akhand, GEB, DU).
  5. Immunoinformatics Approach for Designing and Modeling of Epitope- Based Vaccine Against Zika Virus E Protein. Student: Habiba Afrin, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2015.
  6. A Systems Biology approach delineates models depicting interactions between intronic miR-3666, its host gene FOXP2 and their targets in neurodevelopmental processes and related disorders. Student: Salwa Mohd. Mostafa, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2015.
  7. Predicted Zika Virus miRNAs Associated with Viral Pathogenesis through Alteration of Host Genes Involved in Immune Response and Neurological Functions. Student: Sajedul Islam, Department of genetic Engineering and Biotechnology, University of Dhaka. M.S. thesis 2016.
  8. Elucidation of the Effect of Mutations in Non-coding RNAs in Cancer. Student: Md. Wahid Murad. Department of genetic Engineering and Biotechnology, University of Dhaka. MS thesis 2017.
  9. Whole Genome Sequence of Acute Hepatopancreatic Necrosis Disease (AHPND) positive Vibrio parahaemolyticus strain isolated from shrimp (Penaeus monodon) of south-west region of Bangladesh. Student: Shawon Ahmed (Dept. of Fisheries, DU), Abdullah Al Kamran (GEB, DU), 2018 (ongoing).

MPhil/PhD:

  1. Mutations and polymorphisms detection in marker genes of cervical carcinoma in Bangladeshi patients. Student: Fatima Tuj Zohura, Department of genetic Engineering and Biotechnology, University of Dhaka. M.Phil. thesis (passed: 2018)
  2. The Molecular Basis of the Pelvi-Ureteric Junction (PUJ) Obstruction in Patients with Hydronephrosis in Children. Student: Prof DR. Sadrul Alam, Department of genetic Engineering and Biotechnology, University of Dhaka. PhD thesis (Ongoing).

 

 

Dr. Abul Bashar Mir Md. Khademul Islam

Associate Professor
 
Room: TR-05, 5th floor, Science Complex Building,
Department of Genetic Engineering and Biotechnology,
University of Dhaka, Dhaka- 1000.
Phone: +880-2-9661920~59 Ext. 7816, 7825   
Mobile: +8801765580953         
Fax:     +880-2-9667222
Email: khademul@du.ac.bd

 

Position Held:

Present position:

  • Associate Professor (11th March 2015 - to date: Department of Genetic Engineering and Biotechnology, University of Dhaka, Dhaka, Bangladesh.
  • Administrative Council Member (1/1/2015 – 1/1/2017): Administrative Council (AC), Centre for Bioinformatics Learning Advancement and Systematics Training (cBLAST), University of Dhaka.
  • Faculty: (2016 to date) cBLAST (Centre for Bioinformatics Learning Advancement and Systematics Training), University of Dhaka, Bangladesh.
  • Part-Time Faculty (27/07/2017 – to date): Department of Pharmacy, University of Dhaka.
  • Part-Time Faculty (10/07/2018 – to date): Department of Oceanography, University of Dhaka
  • Previous positions:
  • Student Adviser: (24th September 2012 – July 24, 2016) Department of Genetic Engineering and Biotechnology, DU
  • Assistant Professor (October 2012 – 10th March 2015): Department of Genetic Engineering and Biotechnology, University of Dhaka, Dhaka, Bangladesh.
  • Lecturer (August 2005 to September 2012): Department of Genetic Engineering and Biotechnology, University of Dhaka, Dhaka, Bangladesh.
  • Visiting Scholar (1st January to 30th June, 2010): Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, USA.
  • Visiting Scholar (2nd July to 30th September, 2008): Research Unit on Biomedical Informatics, Barcelona Biomedical Research Park (PRBB), Barcelona, Spain.
  • Visiting Scientist (10th July to 31st September, 2006): Department of Bio-Signal Analysis, Applied Medical Engineering Science, Graduate School of Medicine, Yamaguchi University, Japan.
  • Lecturer (15th March to 6th August, 2005): Department of Microbiology, Stamford University Bangladesh.

 

Special Training:

  1. Viral Bioinformatics and Genomics: (2018) organized by Wellcome Genome Campus Advanced Courses and Scientific Conferences. Venue: Oxford University Clinical Research Unit, Ho Chi Minh, Vietnam (2-7 September 2018). Training on Whole Genome Next Generation Sequencing & data analysis (de novo & reference mapping, annotation, consensus & variant calling), metagenomics, phylogenetics, pathogen classification, multiple sequence alignment, BASH scripting, Linux/Unix, NGS data analysis. (WGCAC full fellowship receipient).
  2. CRISPR–CAS9 Genome Editing Technology (2017). Organized by Global Network of Bangladeshi Biotechnologist (GNOBB), 28 March 2017. Bangladesh.
  3. Next Generation ChIP-sequencing (2010): Prof. Richird Yong Lab, Whitehead Institute, MIT, USA.
  4. EMBO Practical course on Networks in Biology analysis, modelling and reverse engineering: (22-25 September 2009). Bologna Italy. Participated with EMBO fellowship.
  5. Proteomics and Structural Genomics of Membrane Proteins: (27/3/06 to 31/3/06). Participated in the workshop organized by Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen, the Netherlands.
  6. Proteomics and System Biology: (31/3/06 to 5/4/06). Visited Professor Peter JF Henderson’s Laboratory in the Institute of Membrane & System Biology, University of Leeds, UK to have basic training & knowledge on bioinformatics, proteomics and system biology tools & techniques.
  7. Molecular techniques in Aquaculture and seafood safety: (13/2/06 to 17/2/06). Participated in FAO, UNESCO, ASM sponsored International workshop on “Molecular Techniques in Aquaculture and Seafood Safety” organized by Department of Fishery Microbiology, Karnataka University, Mangalore, India.
  8. Molecular Ecological Techniques: (4/12/04 to 8/12/04). Participated in training program on Molecular Ecological Techniques jointly organized by University of Bergen, Norway and Department of Microbiology, University of Dhaka, Bangladesh (Held in Dhaka University, Bangladesh).
  9. Meetings of Nobel Laureates: (1/7/07 to 6/7/07). Participated in 57th Meetings of Nobel Laureates at Lindau, Lake Constance, Germany. (Participants were chosen based on a competition among young scientist worldwide).
  10. Faculty Development Program: (10/04/2015 – 1/05/2015). Participated full time (8 hours a day) Stamford Award Program on faculty development course offered by Stamford University Bangladesh.
  11. Award Leader Training (8/05/2012) – Organized by The Duke of Edinburgh’s International Award Association.

 

 

Useful Links

Quick Links

For Students

Get In Touch